Unique k-mers as Strain-Specific Barcodes for Phylogenetic Analysis and Natural Microbiome Profiling
نویسندگان
چکیده
منابع مشابه
Protein profiling for phylogenetic relationship in snakehead species
Protein banding pattern of eight snakeheads – Channa species viz., Channa striatus, Channa marulius, Channa punctatus, Channa diplogramme, Channa bleheri, Channa gachua, Channa stewartii and Channa aurantimaculata collected from different regions of India were used to study the phylogenetic relationship among them. The banding pattern from muscle protein indicated a unique profile for each spec...
متن کاملProtein profiling for phylogenetic relationship in snakehead species
Protein banding pattern of eight snakeheads – Channa species viz., Channa striatus, Channa marulius, Channa punctatus, Channa diplogramme, Channa bleheri, Channa gachua, Channa stewartii and Channa aurantimaculata collected from different regions of India were used to study the phylogenetic relationship among them. The banding pattern from muscle protein indicated a unique profile for each spec...
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I f Darwin were to survey the entirety of the biological sciences today, he would be pleased to observe how central phylogenies and ‘‘tree thinking’’ are to integrative research (1). Biologists of all stripes now realize that phylogenies are not exotic, but fundamental and routine tools for understanding not only history but mechanism, organization, and function of biological networks at all le...
متن کاملPrivately Matching k-mers
We construct efficient protocols for several tasks related to private matching of k-mers (sets of k length strings). These are based upon the evaluation of functionalities in the levelled homomorphic encryption scheme YASHE which supports addition and multiplication as SIMD operations. We analyse the correctness and security properties of these protocols as well their resource costs in terms of...
متن کاملUnique k-SAT is as Hard as k-SAT
In this work we show that Unique k-SAT is as hard as k-SAT for every k ∈ N. This settles a conjecture by Calabro, Impagliazzo, Kabanets and Paturi [4]. To provide an affirmative answer to this conjecture, we develop a randomness optimal construction of Isolation Lemma for k-SAT.
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ژورنال
عنوان ژورنال: International Journal of Molecular Sciences
سال: 2020
ISSN: 1422-0067
DOI: 10.3390/ijms21030944